#[cfg(feature = "serde-serialize")]
use serde::{Deserialize, Serialize};

use num::One;
use alga::general::ComplexField;

use crate::allocator::Allocator;
use crate::base::{DefaultAllocator, Matrix, MatrixMN, MatrixN, SquareMatrix, Vector};
use crate::constraint::{SameNumberOfRows, ShapeConstraint};
use crate::dimension::{Dim, DimAdd, DimSum, DimDiff, DimSub, Dynamic, U1};
use crate::storage::{Storage, StorageMut};

/// The Cholesky decomposition of a symmetric-definite-positive matrix.
#[cfg_attr(feature = "serde-serialize", derive(Serialize, Deserialize))]
#[cfg_attr(
    feature = "serde-serialize",
    serde(bound(serialize = "DefaultAllocator: Allocator<N, D>,
         MatrixN<N, D>: Serialize"))
)]
#[cfg_attr(
    feature = "serde-serialize",
    serde(bound(deserialize = "DefaultAllocator: Allocator<N, D>,
         MatrixN<N, D>: Deserialize<'de>"))
)]
#[derive(Clone, Debug)]
pub struct Cholesky<N: ComplexField, D: Dim>
where
    DefaultAllocator: Allocator<N, D, D>,
{
    chol: MatrixN<N, D>,
}

impl<N: ComplexField, D: Dim> Copy for Cholesky<N, D>
where
    DefaultAllocator: Allocator<N, D, D>,
    MatrixN<N, D>: Copy,
{
}

impl<N: ComplexField, D: DimSub<Dynamic>> Cholesky<N, D>
where
    DefaultAllocator: Allocator<N, D, D>,
{
    /// Attempts to compute the Cholesky decomposition of `matrix`.
    ///
    /// Returns `None` if the input matrix is not definite-positive. The input matrix is assumed
    /// to be symmetric and only the lower-triangular part is read.
    pub fn new(mut matrix: MatrixN<N, D>) -> Option<Self> {
        assert!(matrix.is_square(), "The input matrix must be square.");

        let n = matrix.nrows();

        for j in 0..n {
            for k in 0..j {
                let factor = unsafe { -*matrix.get_unchecked((j, k)) };

                let (mut col_j, col_k) = matrix.columns_range_pair_mut(j, k);
                let mut col_j = col_j.rows_range_mut(j..);
                let col_k = col_k.rows_range(j..);

                col_j.axpy(factor.conjugate(), &col_k, N::one());
            }

            let diag = unsafe { *matrix.get_unchecked((j, j)) };
            if !diag.is_zero() {
                if let Some(denom) = diag.try_sqrt() {
                    unsafe {
                        *matrix.get_unchecked_mut((j, j)) = denom;
                    }

                    let mut col = matrix.slice_range_mut(j + 1.., j);
                    col /= denom;
                    continue;
                }
            }

            // The diagonal element is either zero or its square root could not
            // be taken (e.g. for negative real numbers).
            return None;
        }

        Some(Cholesky { chol: matrix })
    }

    /// Retrieves the lower-triangular factor of the Cholesky decomposition with its strictly
    /// upper-triangular part filled with zeros.
    pub fn unpack(mut self) -> MatrixN<N, D> {
        self.chol.fill_upper_triangle(N::zero(), 1);
        self.chol
    }

    /// Retrieves the lower-triangular factor of the Cholesky decomposition, without zeroing-out
    /// its strict upper-triangular part.
    ///
    /// The values of the strict upper-triangular part are garbage and should be ignored by further
    /// computations.
    pub fn unpack_dirty(self) -> MatrixN<N, D> {
        self.chol
    }

    /// Retrieves the lower-triangular factor of the Cholesky decomposition with its strictly
    /// uppen-triangular part filled with zeros.
    pub fn l(&self) -> MatrixN<N, D> {
        self.chol.lower_triangle()
    }

    /// Retrieves the lower-triangular factor of the Cholesky decomposition, without zeroing-out
    /// its strict upper-triangular part.
    ///
    /// This is an allocation-less version of `self.l()`. The values of the strict upper-triangular
    /// part are garbage and should be ignored by further computations.
    pub fn l_dirty(&self) -> &MatrixN<N, D> {
        &self.chol
    }

    /// Solves the system `self * x = b` where `self` is the decomposed matrix and `x` the unknown.
    ///
    /// The result is stored on `b`.
    pub fn solve_mut<R2: Dim, C2: Dim, S2>(&self, b: &mut Matrix<N, R2, C2, S2>)
    where
        S2: StorageMut<N, R2, C2>,
        ShapeConstraint: SameNumberOfRows<R2, D>,
    {
        let _ = self.chol.solve_lower_triangular_mut(b);
        let _ = self.chol.ad_solve_lower_triangular_mut(b);
    }

    /// Returns the solution of the system `self * x = b` where `self` is the decomposed matrix and
    /// `x` the unknown.
    pub fn solve<R2: Dim, C2: Dim, S2>(&self, b: &Matrix<N, R2, C2, S2>) -> MatrixMN<N, R2, C2>
    where
        S2: Storage<N, R2, C2>,
        DefaultAllocator: Allocator<N, R2, C2>,
        ShapeConstraint: SameNumberOfRows<R2, D>,
    {
        let mut res = b.clone_owned();
        self.solve_mut(&mut res);
        res
    }

    /// Computes the inverse of the decomposed matrix.
    pub fn inverse(&self) -> MatrixN<N, D> {
        let shape = self.chol.data.shape();
        let mut res = MatrixN::identity_generic(shape.0, shape.1);

        self.solve_mut(&mut res);
        res
    }

    /// Given the Cholesky decomposition of a matrix `M`, a scalar `sigma` and a vector `v`,
    /// performs a rank one update such that we end up with the decomposition of `M + sigma * (v * v.adjoint())`.
    #[inline]
    pub fn rank_one_update<R2: Dim, S2>(&mut self, x: &Vector<N, R2, S2>, sigma: N::RealField)
    where
        S2: Storage<N, R2, U1>,
        DefaultAllocator: Allocator<N, R2, U1>,
        ShapeConstraint: SameNumberOfRows<R2, D>,
    {
        Self::xx_rank_one_update(&mut self.chol, &mut x.clone_owned(), sigma)
    }

    /// Updates the decomposition such that we get the decomposition of a matrix with the given column `col` in the `j`th position.
    /// Since the matrix is square, an identical row will be added in the `j`th row.
    pub fn insert_column<R2, S2>(
        &self,
        j: usize,
        col: Vector<N, R2, S2>,
    ) -> Cholesky<N, DimSum<D, U1>>
    where
        D: DimAdd<U1>,
        R2: Dim,
        S2: Storage<N, R2, U1>,
        DefaultAllocator: Allocator<N, DimSum<D, U1>, DimSum<D, U1>> + Allocator<N, R2>,
        ShapeConstraint: SameNumberOfRows<R2, DimSum<D, U1>>,
    {
        let mut col = col.into_owned();
        // for an explanation of the formulas, see https://en.wikipedia.org/wiki/Cholesky_decomposition#Updating_the_decomposition
        let n = col.nrows();
        assert_eq!(n, self.chol.nrows() + 1, "The new column must have the size of the factored matrix plus one.");
        assert!(j < n, "j needs to be within the bound of the new matrix.");

        // loads the data into a new matrix with an additional jth row/column
        let mut chol = unsafe { Matrix::new_uninitialized_generic(self.chol.data.shape().0.add(U1), self.chol.data.shape().1.add(U1)) };
        chol.slice_range_mut(..j, ..j).copy_from(&self.chol.slice_range(..j, ..j));
        chol.slice_range_mut(..j, j + 1..).copy_from(&self.chol.slice_range(..j, j..));
        chol.slice_range_mut(j + 1.., ..j).copy_from(&self.chol.slice_range(j.., ..j));
        chol.slice_range_mut(j + 1.., j + 1..).copy_from(&self.chol.slice_range(j.., j..));

        // update the jth row
        let top_left_corner = self.chol.slice_range(..j, ..j);

        let col_j = col[j];
        let (mut new_rowj_adjoint, mut new_colj) = col.rows_range_pair_mut(..j, j + 1..);
        assert!(top_left_corner.solve_lower_triangular_mut(&mut new_rowj_adjoint), "Cholesky::insert_column : Unable to solve lower triangular system!");

        new_rowj_adjoint.adjoint_to(&mut chol.slice_range_mut(j, ..j));

        // update the center element
        let center_element = N::sqrt(col_j - N::from_real(new_rowj_adjoint.norm_squared()));
        chol[(j, j)] = center_element;

        // update the jth column
        let bottom_left_corner = self.chol.slice_range(j.., ..j);
        // new_colj = (col_jplus - bottom_left_corner * new_rowj.adjoint()) / center_element;
        new_colj.gemm(-N::one() / center_element, &bottom_left_corner, &new_rowj_adjoint, N::one() / center_element);
        chol.slice_range_mut(j + 1.., j).copy_from(&new_colj);

        // update the bottom right corner
        let mut bottom_right_corner = chol.slice_range_mut(j + 1.., j + 1..);
        Self::xx_rank_one_update(&mut bottom_right_corner, &mut new_colj, -N::RealField::one());

        Cholesky { chol }
    }

    /// Updates the decomposition such that we get the decomposition of the factored matrix with its `j`th column removed.
    /// Since the matrix is square, the `j`th row will also be removed.
    pub fn remove_column(
        &self,
        j: usize,
    ) -> Cholesky<N, DimDiff<D, U1>>
        where
            D: DimSub<U1>,
            DefaultAllocator: Allocator<N, DimDiff<D, U1>, DimDiff<D, U1>> + Allocator<N, D>
    {
        let n = self.chol.nrows();
        assert!(n > 0, "The matrix needs at least one column.");
        assert!(j < n, "j needs to be within the bound of the matrix.");

        // loads the data into a new matrix except for the jth row/column
        let mut chol = unsafe { Matrix::new_uninitialized_generic(self.chol.data.shape().0.sub(U1), self.chol.data.shape().1.sub(U1)) };
        chol.slice_range_mut(..j, ..j).copy_from(&self.chol.slice_range(..j, ..j));
        chol.slice_range_mut(..j, j..).copy_from(&self.chol.slice_range(..j, j + 1..));
        chol.slice_range_mut(j.., ..j).copy_from(&self.chol.slice_range(j + 1.., ..j));
        chol.slice_range_mut(j.., j..).copy_from(&self.chol.slice_range(j + 1.., j + 1..));

        // updates the bottom right corner
        let mut bottom_right_corner = chol.slice_range_mut(j.., j..);
        let mut workspace = self.chol.column(j).clone_owned();
        let mut old_colj = workspace.rows_range_mut(j + 1..);
        Self::xx_rank_one_update(&mut bottom_right_corner, &mut old_colj, N::RealField::one());

        Cholesky { chol }
    }

    /// Given the Cholesky decomposition of a matrix `M`, a scalar `sigma` and a vector `x`,
    /// performs a rank one update such that we end up with the decomposition of `M + sigma * (x * x.adjoint())`.
    ///
    /// This helper method is called by `rank_one_update` but also `insert_column` and `remove_column`
    /// where it is used on a square slice of the decomposition
    fn xx_rank_one_update<Dm, Sm, Rx, Sx>(chol : &mut Matrix<N, Dm, Dm, Sm>, x: &mut Vector<N, Rx, Sx>, sigma: N::RealField)
        where
            //N: ComplexField,
            Dm: Dim,
            Rx: Dim,
            Sm: StorageMut<N, Dm, Dm>,
            Sx: StorageMut<N, Rx, U1>,
    {
        // heavily inspired by Eigen's `llt_rank_update_lower` implementation https://eigen.tuxfamily.org/dox/LLT_8h_source.html
        let n = x.nrows();
        assert_eq!(
            n,
            chol.nrows(),
            "The input vector must be of the same size as the factorized matrix."
        );

        let mut beta = crate::one::<N::RealField>();

        for j in 0..n {
            // updates the diagonal
            let diag = N::real(unsafe { *chol.get_unchecked((j, j)) });
            let diag2 = diag * diag;
            let xj = unsafe { *x.get_unchecked(j) };
            let sigma_xj2 = sigma * N::modulus_squared(xj);
            let gamma = diag2 * beta + sigma_xj2;
            let new_diag = (diag2 + sigma_xj2 / beta).sqrt();
            unsafe { *chol.get_unchecked_mut((j, j)) = N::from_real(new_diag) };
            beta += sigma_xj2 / diag2;
            // updates the terms of L
            let mut xjplus = x.rows_range_mut(j + 1..);
            let mut col_j = chol.slice_range_mut(j + 1.., j);
            // temp_jplus -= (wj / N::from_real(diag)) * col_j;
            xjplus.axpy(-xj / N::from_real(diag), &col_j, N::one());
            if gamma != crate::zero::<N::RealField>() {
                // col_j = N::from_real(nljj / diag) * col_j  + (N::from_real(nljj * sigma / gamma) * N::conjugate(wj)) * temp_jplus;
                col_j.axpy(
                    N::from_real(new_diag * sigma / gamma) * N::conjugate(xj),
                    &xjplus,
                    N::from_real(new_diag / diag),
                );
            }
        }
    }
}

impl<N: ComplexField, D: DimSub<Dynamic>, S: Storage<N, D, D>> SquareMatrix<N, D, S>
where
    DefaultAllocator: Allocator<N, D, D>,
{
    /// Attempts to compute the Cholesky decomposition of this matrix.
    ///
    /// Returns `None` if the input matrix is not definite-positive. The input matrix is assumed
    /// to be symmetric and only the lower-triangular part is read.
    pub fn cholesky(self) -> Option<Cholesky<N, D>> {
        Cholesky::new(self.into_owned())
    }
}